Our Publications and Outreach | MReye research group

FAIR Data and Reusable Methods

Mon, 01 Jan 0001 00:00:00 +0000

We embrace the Open Science movement and therefore aim to make as much of our data and method freely available. However, as most of our data contain potentially identifying information, they cannot be made publicly available. These data can, however, be shared with scientists after signing of a data transfer agreement to ensure the subject’s privacy. Please contact our data access committee for more information.

Reuse our methods

A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression.
American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013
Open methods: The methods to perform peripheral ray-tracing simulations have been made available through the ZOSpy repository.
Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging.
Medical Physics (2025), doi: 10.1002/mp.17576
Open methods: The full methodology to map fundus images to ocular MR-images has been made available through the ZOSpy repository.
Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation.
Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43
Open methods: The methodology for calibrating fundus photographs is made available on GitHub.
ZOSPy: optical ray tracing in Python through OpticStudio.
Journal of Open Source Software (2024), doi: 10.21105/joss.05756
Open methods: We published ZOSPy open-source on GitHub, so you cannot only use it, but also contribute to it.
Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma.
Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Open methods: The Python code to calculate the tumour prominence and basal diameter can be found in Appendix C.
Open data: The MRI and ultrasound measurements of all individual patients are available in Appendix D.
The Value of Static Perimetry in the Diagnosis and Follow-up of Negative Dysphotopsia.
Optometry and Vision Science (2022), doi: 10.1097/opx.0000000000001918
Open methods: The Python code to digitize the visual field data is shared through GitHub.
T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms.
Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290
Open methods: The multi-component EPG fitting algorithm is provided for Mathematica, Matlab and Python.
MRI of Uveal Melanoma.
Cancers (2019), doi: 10.3390/cancers11030377
Open methods: An extensive description of the MRI protocol for intra-ocular pathology can be found here.

Reuse our data

Diagnosing myasthenia gravis using orthoptic measurements: assessing extraocular muscle fatiguability.
Journal of Neurology, Neurosurgery & Psychiatry (2023), doi: 10.1136/jnnp-2022-329859
Open data: The orthoptic measurements of all patients are made available for reuse.
Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders.
Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023
Open data: The quantitative MRI data of the extra-ocular muscles are provided as supplementary materials.
MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma.
Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1
Open data: Both the MRI and ultrasound measurements of all individual patients are made available.
Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma.
Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Open methods: The Python code to calculate the tumour prominence and basal diameter can be found in Appendix C.
Open data: The MRI and ultrasound measurements of all individual patients are available in Appendix D.
Effect of anatomical differences and intraocular lens design on negative dysphotopsia.
Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054
Open data: The resulting ND and control eye model, both with a biconvex IOL, are made available through ZOSPy.
Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses.
Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w
Open data: The perfusion metrics and T1 values of individual patients are made available as supplementary materials.
Magnetic resonance imaging reveals possible cause of diplopia after Baerveldt glaucoma implantation.
PLoS ONE (2022), doi: 10.1371/journal.pone.0276527
Open data: The MRI metrics (eg. bleb volume) and ophthalmic data (eg. ocular motility restrictions) of all patient can be found in the supplementary materials.

Publications by topic

Mon, 01 Jan 0001 00:00:00 +0000

MRI

Kneepkens, Vught, Polling, Klaver, Tideman and Beenakker. A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression. American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013
Klaassen, Ferreira, Luyten and Beenakker. Estimating uveal melanoma volume with ellipsoid tumour models. Acta Ophthalmologica (2025), doi: 10.1111/aos.17492
Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker. Evaluation of MRI Safety of Ru-106 Eye Applicators. Ocular Oncology and Pathology (2025), doi: 10.1159/000542712
Haasjes, Vu and Beenakker. Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging. Medical Physics (2025), doi: 10.1002/mp.17576
Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker. Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning. Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598
Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra. PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy. International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017
Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker. Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma. Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17
Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker. Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma. Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019
Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan. Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders. Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023
Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma. Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149
Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker. Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective. Cancers (2023), doi: 10.3390/cancers15112995
Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker. MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma. Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1
Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker. A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma. Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939
Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker. Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma. Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Keene, Kan, Meeren, Verbist, Tannemaat, Beenakker and Verschuuren. Clinical and imaging clues to the diagnosis and follow‐up of ptosis and ophthalmoparesis. Journal of Cachexia, Sarcopenia and Muscle (2022), doi: 10.1002/jcsm.13089
Vught, Que, Luyten and Beenakker. Effect of anatomical differences and intraocular lens design on negative dysphotopsia. Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054
Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker. Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses. Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w
Beenakker and Rasch. Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.. Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018
Islamaj, Vught, Jordaan-Kuip, Vermeer, Ferreira, Waard, Lemij and Beenakker. Magnetic resonance imaging reveals possible cause of diplopia after Baerveldt glaucoma implantation. PLoS ONE (2022), doi: 10.1371/journal.pone.0276527
Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker. MR imaging characteristics of uveal melanoma with histopathological validation. Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5
Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager, Damato and Oncology, European Ocular Oncology Group and the International Society of Ocular. Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting. Ophthalmic Research (2022), doi: 10.1159/000524372
Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel. An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma. Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697
Vught, Dekker, Stoel, Luyten and Beenakker. Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576
Vught, Shamonin, Luyten, Stoel and Beenakker. MRI-based 3D retinal shape determination. BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855
Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs. Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?. Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021
Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker. The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy. NMR in Biomedicine (2021), doi: 10.1002/nbm.4407
Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman. Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy. Medical Physics (2021), doi: 10.1002/mp.14665
Vught, Luyten and Beenakker. Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206
Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker. Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging. Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010
Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker. MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors. Cancers (2020), doi: 10.3390/cancers12030658
Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling. T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms. Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290
Fonk, Ferreira, Webb, Luyten and Beenakker. The Economic Value of MR-Imaging for Uveal Melanoma. Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405
Koolstra, Beenakker, Koken, Webb and Börnert. Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions. Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594
Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker. MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy. Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568
Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker. MRI of Uveal Melanoma. Cancers (2019), doi: 10.3390/cancers11030377
Jaarsma-Coes, Ferreira, Luyten and Beenakker. Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”. BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y
Beenakker, Wezel, Groen, Webb and Börnert. Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging. PLoS ONE (2019), doi: 10.1371/journal.pone.0222573
Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd. 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology. Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913
Ferreira, Saraiva, Genders, Buchem, Luyten and Beenakker. CT and MR imaging of orbital inflammation. Neuroradiology (2018), doi: 10.1007/s00234-018-2103-4
Wezel, Garpebring, Webb, Osch and Beenakker. Automated eye blink detection and correction method for clinical MR eye imaging. Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355
Isakova, Pralits, Romano, Beenakker, Shamonin and Repetto. Equilibrium shape of the aqueous humor-vitreous substitute interface in vitrectomized eyes. Modeling and Artificial Intelligence in Ophthalmology (2017), doi: 10.35119/maio.v1i3.36
Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten. Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning. Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4
Beenakker, Shamonin, Webb, Luyten and Stoel. Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging. Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161
Ruytenberg, Webb and Beenakker. A multi-purpose open-source triggering platform for magnetic resonance. Journal of Magnetic Resonance (2014), doi: 10.1016/j.jmr.2014.08.009
Brand, Webb and Beenakker. Design and performance of a transformer‐coupled double resonant quadrature birdcage coil for localized proton and phosphorus spectroscopy in the human calf muscle at 7 T. Concepts in Magnetic Resonance Part A (2013), doi: 10.1002/cmr.a.21281
Beenakker, Rijn, Luyten and Webb. High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T. NMR in Biomedicine (2013), doi: 10.1002/nbm.3041

Ocular Oncology

Mortimer, Slopsema, Mazal, Beenakker, Dendale, Denker, Fleury, Groulier, Kacperek, Mishra, Saini, Trofimov, Thariat, Trnková, Vidal, Shih, Hrbacek and Heufelder. PTCOG Ocular Survey - Perspective on Ocular Particle Therapy: Current Practices and Emerging Trends.. International journal of particle therapy (2026), doi: 10.1016/j.ijpt.2026.101300
Hol, Spruijt, Rodrigues, Klaver, Kouwenberg, Bakker, Luyten, Kiliç, Beenakker, Astreinidou and Rasch. Accuracy of day-to-day patient positioning in ocular proton therapy with a dedicated beamline. PLOS One (2025), doi: 10.1371/journal.pone.0333294
Pors, Marinkovic, Deuzeman, Vu, Kerkhof, Wieringen-Warmenhoven, Rasch, Bleeker, Koetsier, Beenakker, Luyten, Creutzberg and Horeweg. Clinical outcomes and risk factors for local failure and visual impairment in patients treated with Ru-106 brachytherapy for uveal melanoma. Clinical and Translational Radiation Oncology (2025), doi: 10.1016/j.ctro.2025.100939
Klaassen, Ferreira, Luyten and Beenakker. Estimating uveal melanoma volume with ellipsoid tumour models. Acta Ophthalmologica (2025), doi: 10.1111/aos.17492
Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker. Evaluation of MRI Safety of Ru-106 Eye Applicators. Ocular Oncology and Pathology (2025), doi: 10.1159/000542712
Haasjes, Vu and Beenakker. Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging. Medical Physics (2025), doi: 10.1002/mp.17576
Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker. Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation. Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43
Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker. Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning. Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598
Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra. PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy. International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017
Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker. Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma. Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17
Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker. Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma. Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019
Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma. Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149
Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker. Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective. Cancers (2023), doi: 10.3390/cancers15112995
Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker. MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma. Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1
Tong, Bastiaannet, Speetjens, Blank, Luyten, Jager, Marinkovic, Vu, Rasch, Creutzberg, Beenakker, Hartgrink, Bosch, Kiliç, Naus, Yavuzyigitoglu, Rij, Burgmans and Kapiteijn. Time Trends in the Treatment and Survival of 5036 Uveal Melanoma Patients in The Netherlands over a 30-Year Period. Cancers (2023), doi: 10.3390/cancers15225419
Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker. A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma. Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939
Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker. Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma. Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker. Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses. Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w
Beenakker and Rasch. Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.. Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018
Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker. MR imaging characteristics of uveal melanoma with histopathological validation. Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5
Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager, Damato and Oncology, European Ocular Oncology Group and the International Society of Ocular. Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting. Ophthalmic Research (2022), doi: 10.1159/000524372
Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel. An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma. Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697
Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs. Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?. Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021
Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman. Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy. Medical Physics (2021), doi: 10.1002/mp.14665
Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker. Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging. Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010
Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker. MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors. Cancers (2020), doi: 10.3390/cancers12030658
Fonk, Ferreira, Webb, Luyten and Beenakker. The Economic Value of MR-Imaging for Uveal Melanoma. Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405
Koolstra, Beenakker, Koken, Webb and Börnert. Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions. Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594
Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker. MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy. Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568
Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker. MRI of Uveal Melanoma. Cancers (2019), doi: 10.3390/cancers11030377
Jaarsma-Coes, Ferreira, Luyten and Beenakker. Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”. BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y
Beenakker, Wezel, Groen, Webb and Börnert. Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging. PLoS ONE (2019), doi: 10.1371/journal.pone.0222573
Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd. 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology. Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913
Wezel, Garpebring, Webb, Osch and Beenakker. Automated eye blink detection and correction method for clinical MR eye imaging. Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355
Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten. Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning. Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4
Beenakker, Rijn, Luyten and Webb. High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T. NMR in Biomedicine (2013), doi: 10.1002/nbm.3041

Visual Optics

Kneepkens, Vught, Polling, Klaver, Tideman and Beenakker. A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression. American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013
Haasjes, Vu and Beenakker. Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging. Medical Physics (2025), doi: 10.1002/mp.17576
Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker. Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation. Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43
Makhotkina, Nijkamp, Berendschot, Borne, Kruchten, Vught, Beenakker, Krijgh, Aslam, Pesudovs and Nuijts. Measuring quality of vision including negative dysphotopsia. Acta Ophthalmologica (2024), doi: 10.1111/aos.15762
Vught, Haasjes and Beenakker. ZOSPy: optical ray tracing in Python through OpticStudio. Journal of Open Source Software (2024), doi: 10.21105/joss.05756
Grzybowski and Beenakker. More on light dysphotopsia origin in pseudophakia. Graefe's Archive for Clinical and Experimental Ophthalmology (2023), doi: 10.1007/s00417-023-06029-w
Vught, Luyten and Beenakker. Peripheral visual field shifts after intraocular lens implantation. Journal of Cataract & Refractive Surgery (2023), doi: 10.1097/j.jcrs.0000000000001299
Vught, Que, Luyten and Beenakker. Effect of anatomical differences and intraocular lens design on negative dysphotopsia. Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054
Rozendal, Vught, Luyten and Beenakker. The Value of Static Perimetry in the Diagnosis and Follow-up of Negative Dysphotopsia. Optometry and Vision Science (2022), doi: 10.1097/opx.0000000000001918
Gaurisankar, Rijn, Cheng, Luyten and Beenakker. Two-year results after combined phacoemulsification and iris-fixated phakic intraocular lens removal. Graefe's Archive for Clinical and Experimental Ophthalmology (2022), doi: 10.1007/s00417-021-05442-3
Gaurisankar, Rijn, Luyten and Beenakker. Differences between Scheimpflug and optical coherence tomography in determining safety distances in eyes with an iris-fixating phakic intraocular lens. Graefe's Archive for Clinical and Experimental Ophthalmology (2021), doi: 10.1007/s00417-020-04874-7
Vught, Dekker, Stoel, Luyten and Beenakker. Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576
Rijn, Gaurisankar, Saxena, Gibbes, Jongman, Haasnoot, Cheng, Beenakker and Luyten. Implantation of an iris-fixated phakic intraocular lens for the correction of hyperopia: 15-year follow-up. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000532
Gaurisankar, Rijn, Haasnoot, Verhoeven, Klaver, Luyten and Beenakker. Long‐term longitudinal changes in axial length in the Caucasian myopic and hyperopic population with a phakic intraocular lens. Acta Ophthalmologica (2021), doi: 10.1111/aos.14647
Vught, Shamonin, Luyten, Stoel and Beenakker. MRI-based 3D retinal shape determination. BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855
Vught, Beenakker and Luyten. Reply to comment on: Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotop. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000431
Vught, Luyten and Beenakker. Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206
Rijn, Wijnen, Dooren, Cheng, Beenakker and Luyten. Improved Interchangeability with Different Corneal Specular Microscopes for Quantitative Endothelial Cell Analysis. Clinical Ophthalmology (2020), doi: 10.2147/opth.s228347
Rijn, Gaurisankar, Ilgenfritz, Lima, Haasnoot, Beenakker, Cheng and Luyten. Middle- and long-term results after iris-fixated phakic intraocular lens implantation in myopic and hyperopic patients: a meta-analysis. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000002
Gaurisankar, Rijn, Lima, Ilgenfritz, Cheng, Haasnoot, Luyten and Beenakker. Correlations between ocular biometrics and refractive error: A systematic review and meta‐analysis. Acta Ophthalmologica (2019), doi: 10.1111/aos.14208
Beenakker, Shamonin, Webb, Luyten and Stoel. Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging. Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161

Ocular Radiotherapy

Mortimer, Slopsema, Mazal, Beenakker, Dendale, Denker, Fleury, Groulier, Kacperek, Mishra, Saini, Trofimov, Thariat, Trnková, Vidal, Shih, Hrbacek and Heufelder. PTCOG Ocular Survey - Perspective on Ocular Particle Therapy: Current Practices and Emerging Trends.. International journal of particle therapy (2026), doi: 10.1016/j.ijpt.2026.101300
Hol, Spruijt, Rodrigues, Klaver, Kouwenberg, Bakker, Luyten, Kiliç, Beenakker, Astreinidou and Rasch. Accuracy of day-to-day patient positioning in ocular proton therapy with a dedicated beamline. PLOS One (2025), doi: 10.1371/journal.pone.0333294
Pors, Marinkovic, Deuzeman, Vu, Kerkhof, Wieringen-Warmenhoven, Rasch, Bleeker, Koetsier, Beenakker, Luyten, Creutzberg and Horeweg. Clinical outcomes and risk factors for local failure and visual impairment in patients treated with Ru-106 brachytherapy for uveal melanoma. Clinical and Translational Radiation Oncology (2025), doi: 10.1016/j.ctro.2025.100939
Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker. Evaluation of MRI Safety of Ru-106 Eye Applicators. Ocular Oncology and Pathology (2025), doi: 10.1159/000542712
Haasjes, Vu and Beenakker. Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging. Medical Physics (2025), doi: 10.1002/mp.17576
Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker. Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation. Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43
Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker. Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning. Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598
Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra. PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy. International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017
Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker. Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma. Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17
Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker. Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma. Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019
Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma. Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149
Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker. Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma. Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Beenakker and Rasch. Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.. Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018
Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel. An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma. Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697
Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman. Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy. Medical Physics (2021), doi: 10.1002/mp.14665
Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker. Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging. Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010
Fonk, Ferreira, Webb, Luyten and Beenakker. The Economic Value of MR-Imaging for Uveal Melanoma. Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405

Quantitative MRI

Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker. Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma. Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17
Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan. Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders. Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023
Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker. Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses. Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w
Velde, Hooijmans, Mishre, Keene, Koeks, Veeger, Alleman, Zwet, Beenakker, Verschuuren, Kan and Niks. Selection Approach to Identify the Optimal Biomarker Using Quantitative Muscle MRI and Functional Assessments in Becker Muscular Dystrophy. Neurology (2021), doi: 10.1212/wnl.0000000000012233
Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker. The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy. NMR in Biomedicine (2021), doi: 10.1002/nbm.4407
Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling. T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms. Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290

Publications by year

Mon, 01 Jan 0001 00:00:00 +0000

2026

Mortimer, Slopsema, Mazal, Beenakker, Dendale, Denker, Fleury, Groulier, Kacperek, Mishra, Saini, Trofimov, Thariat, Trnková, Vidal, Shih, Hrbacek and Heufelder. PTCOG Ocular Survey - Perspective on Ocular Particle Therapy: Current Practices and Emerging Trends.. International journal of particle therapy (2026), doi: 10.1016/j.ijpt.2026.101300

2025

Kneepkens, Vught, Polling, Klaver, Tideman and Beenakker. A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression. American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013
Hol, Spruijt, Rodrigues, Klaver, Kouwenberg, Bakker, Luyten, Kiliç, Beenakker, Astreinidou and Rasch. Accuracy of day-to-day patient positioning in ocular proton therapy with a dedicated beamline. PLOS One (2025), doi: 10.1371/journal.pone.0333294
Pors, Marinkovic, Deuzeman, Vu, Kerkhof, Wieringen-Warmenhoven, Rasch, Bleeker, Koetsier, Beenakker, Luyten, Creutzberg and Horeweg. Clinical outcomes and risk factors for local failure and visual impairment in patients treated with Ru-106 brachytherapy for uveal melanoma. Clinical and Translational Radiation Oncology (2025), doi: 10.1016/j.ctro.2025.100939
Klaassen, Ferreira, Luyten and Beenakker. Estimating uveal melanoma volume with ellipsoid tumour models. Acta Ophthalmologica (2025), doi: 10.1111/aos.17492
Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker. Evaluation of MRI Safety of Ru-106 Eye Applicators. Ocular Oncology and Pathology (2025), doi: 10.1159/000542712
Haasjes, Vu and Beenakker. Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging. Medical Physics (2025), doi: 10.1002/mp.17576

2024

Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker. Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation. Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43
Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker. Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning. Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598
Makhotkina, Nijkamp, Berendschot, Borne, Kruchten, Vught, Beenakker, Krijgh, Aslam, Pesudovs and Nuijts. Measuring quality of vision including negative dysphotopsia. Acta Ophthalmologica (2024), doi: 10.1111/aos.15762
Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra. PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy. International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017
Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker. Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma. Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17
Vught, Haasjes and Beenakker. ZOSPy: optical ray tracing in Python through OpticStudio. Journal of Open Source Software (2024), doi: 10.21105/joss.05756

2023

Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker. Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma. Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019
Keene, Nie, Brink, Notting, Verschuuren, Kan, Beenakker and Tannemaat. Diagnosing myasthenia gravis using orthoptic measurements: assessing extraocular muscle fatiguability. Journal of Neurology, Neurosurgery & Psychiatry (2023), doi: 10.1136/jnnp-2022-329859
Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan. Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders. Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023
Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma. Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149
Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker. Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective. Cancers (2023), doi: 10.3390/cancers15112995
Grzybowski and Beenakker. More on light dysphotopsia origin in pseudophakia. Graefe's Archive for Clinical and Experimental Ophthalmology (2023), doi: 10.1007/s00417-023-06029-w
Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker. MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma. Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1
Vught, Luyten and Beenakker. Peripheral visual field shifts after intraocular lens implantation. Journal of Cataract & Refractive Surgery (2023), doi: 10.1097/j.jcrs.0000000000001299
Tong, Bastiaannet, Speetjens, Blank, Luyten, Jager, Marinkovic, Vu, Rasch, Creutzberg, Beenakker, Hartgrink, Bosch, Kiliç, Naus, Yavuzyigitoglu, Rij, Burgmans and Kapiteijn. Time Trends in the Treatment and Survival of 5036 Uveal Melanoma Patients in The Netherlands over a 30-Year Period. Cancers (2023), doi: 10.3390/cancers15225419

2022

Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker. A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma. Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939
Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker. Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma. Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001
Keene, Kan, Meeren, Verbist, Tannemaat, Beenakker and Verschuuren. Clinical and imaging clues to the diagnosis and follow‐up of ptosis and ophthalmoparesis. Journal of Cachexia, Sarcopenia and Muscle (2022), doi: 10.1002/jcsm.13089
Vught, Que, Luyten and Beenakker. Effect of anatomical differences and intraocular lens design on negative dysphotopsia. Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054
Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker. Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses. Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w
Beenakker and Rasch. Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.. Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018
Islamaj, Vught, Jordaan-Kuip, Vermeer, Ferreira, Waard, Lemij and Beenakker. Magnetic resonance imaging reveals possible cause of diplopia after Baerveldt glaucoma implantation. PLoS ONE (2022), doi: 10.1371/journal.pone.0276527
Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker. MR imaging characteristics of uveal melanoma with histopathological validation. Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5
Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager, Damato and Oncology, European Ocular Oncology Group and the International Society of Ocular. Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting. Ophthalmic Research (2022), doi: 10.1159/000524372
Rozendal, Vught, Luyten and Beenakker. The Value of Static Perimetry in the Diagnosis and Follow-up of Negative Dysphotopsia. Optometry and Vision Science (2022), doi: 10.1097/opx.0000000000001918
Gaurisankar, Rijn, Cheng, Luyten and Beenakker. Two-year results after combined phacoemulsification and iris-fixated phakic intraocular lens removal. Graefe's Archive for Clinical and Experimental Ophthalmology (2022), doi: 10.1007/s00417-021-05442-3

2021

Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel. An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma. Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697
Gaurisankar, Rijn, Luyten and Beenakker. Differences between Scheimpflug and optical coherence tomography in determining safety distances in eyes with an iris-fixating phakic intraocular lens. Graefe's Archive for Clinical and Experimental Ophthalmology (2021), doi: 10.1007/s00417-020-04874-7
Vught, Dekker, Stoel, Luyten and Beenakker. Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576
Rijn, Gaurisankar, Saxena, Gibbes, Jongman, Haasnoot, Cheng, Beenakker and Luyten. Implantation of an iris-fixated phakic intraocular lens for the correction of hyperopia: 15-year follow-up. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000532
Gaurisankar, Rijn, Haasnoot, Verhoeven, Klaver, Luyten and Beenakker. Long‐term longitudinal changes in axial length in the Caucasian myopic and hyperopic population with a phakic intraocular lens. Acta Ophthalmologica (2021), doi: 10.1111/aos.14647
Vught, Shamonin, Luyten, Stoel and Beenakker. MRI-based 3D retinal shape determination. BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855
Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs. Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?. Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021
Vught, Beenakker and Luyten. Reply to comment on: Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotop. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000431
Velde, Hooijmans, Mishre, Keene, Koeks, Veeger, Alleman, Zwet, Beenakker, Verschuuren, Kan and Niks. Selection Approach to Identify the Optimal Biomarker Using Quantitative Muscle MRI and Functional Assessments in Becker Muscular Dystrophy. Neurology (2021), doi: 10.1212/wnl.0000000000012233
Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker. The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy. NMR in Biomedicine (2021), doi: 10.1002/nbm.4407
Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman. Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy. Medical Physics (2021), doi: 10.1002/mp.14665

2020

Vught, Luyten and Beenakker. Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206
Rijn, Wijnen, Dooren, Cheng, Beenakker and Luyten. Improved Interchangeability with Different Corneal Specular Microscopes for Quantitative Endothelial Cell Analysis. Clinical Ophthalmology (2020), doi: 10.2147/opth.s228347
Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker. Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging. Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010
Rijn, Gaurisankar, Ilgenfritz, Lima, Haasnoot, Beenakker, Cheng and Luyten. Middle- and long-term results after iris-fixated phakic intraocular lens implantation in myopic and hyperopic patients: a meta-analysis. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000002
Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker. MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors. Cancers (2020), doi: 10.3390/cancers12030658
Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling. T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms. Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290
Fonk, Ferreira, Webb, Luyten and Beenakker. The Economic Value of MR-Imaging for Uveal Melanoma. Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405

2019

Koolstra, Beenakker, Koken, Webb and Börnert. Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions. Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594
Gaurisankar, Rijn, Lima, Ilgenfritz, Cheng, Haasnoot, Luyten and Beenakker. Correlations between ocular biometrics and refractive error: A systematic review and meta‐analysis. Acta Ophthalmologica (2019), doi: 10.1111/aos.14208
Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker. MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy. Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568
Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker. MRI of Uveal Melanoma. Cancers (2019), doi: 10.3390/cancers11030377
Jaarsma-Coes, Ferreira, Luyten and Beenakker. Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”. BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y
Beenakker, Wezel, Groen, Webb and Börnert. Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging. PLoS ONE (2019), doi: 10.1371/journal.pone.0222573

2018

Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd. 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology. Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913
Ferreira, Saraiva, Genders, Buchem, Luyten and Beenakker. CT and MR imaging of orbital inflammation. Neuroradiology (2018), doi: 10.1007/s00234-018-2103-4

2017

Wezel, Garpebring, Webb, Osch and Beenakker. Automated eye blink detection and correction method for clinical MR eye imaging. Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355
Isakova, Pralits, Romano, Beenakker, Shamonin and Repetto. Equilibrium shape of the aqueous humor-vitreous substitute interface in vitrectomized eyes. Modeling and Artificial Intelligence in Ophthalmology (2017), doi: 10.35119/maio.v1i3.36
Diemen, Berends, Akram, Wezel, Teeuwisse, Mik, Kan, Webb, Beenakker and Groeneveld. Validation of a pharmacological model for mitochondrial dysfunction in healthy subjects using simvastatin: A randomized placebo-controlled proof-of-pharmacology study. European Journal of Pharmacology (2017), doi: 10.1016/j.ejphar.2017.09.031

2016

Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten. Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning. Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4

2015

Beenakker, Shamonin, Webb, Luyten and Stoel. Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging. Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161

2014

Ruytenberg, Webb and Beenakker. A multi-purpose open-source triggering platform for magnetic resonance. Journal of Magnetic Resonance (2014), doi: 10.1016/j.jmr.2014.08.009

2013

Brand, Webb and Beenakker. Design and performance of a transformer‐coupled double resonant quadrature birdcage coil for localized proton and phosphorus spectroscopy in the human calf muscle at 7 T. Concepts in Magnetic Resonance Part A (2013), doi: 10.1002/cmr.a.21281
Beenakker, Rijn, Luyten and Webb. High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T. NMR in Biomedicine (2013), doi: 10.1002/nbm.3041

2012

Beenakker, Ashcroft, Lindeman and Oosterkamp. Mechanical Properties of the Extracellular Matrix of the Aorta Studied by Enzymatic Treatments. Biophysical Journal (2012), doi: 10.1016/j.bpj.2012.03.041
He, Lamers, Beenakker, Cui, Ghotra, Danen, Meijer, Spaink and Snaar‐Jagalska. Neutrophil‐mediated experimental metastasis is enhanced by VEGFR inhibition in a zebrafish xenograft model. The Journal of Pathology (2012), doi: 10.1002/path.4013

2010

Lindeman, Ashcroft, Beenakker, Es, Koekkoek, Prins, Tielemans, Abdul-Hussien, Bank and Oosterkamp. Distinct defects in collagen microarchitecture underlie vessel-wall failure in advanced abdominal aneurysms and aneurysms in Marfan syndrome. Proceedings of the National Academy of Sciences (2010), doi: 10.1073/pnas.0910312107