Publications by topic

MRI

• A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression

  Kneepkens, Vught, Polling, Klaver, Tideman and Beenakker
  American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013 
• Estimating uveal melanoma volume with ellipsoid tumour models

  Klaassen, Ferreira, Luyten and Beenakker
  Acta Ophthalmologica (2025), doi: 10.1111/aos.17492 
• Evaluation of MRI Safety of Ru-106 Eye Applicators

  Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker
  Ocular Oncology and Pathology (2025), doi: 10.1159/000542712 
• Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging

  Haasjes, Vu and Beenakker
  Medical Physics (2025), doi: 10.1002/mp.17576 
• Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning

  Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker
  Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598 
• PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy

  Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra
  International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017 
• Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma

  Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker
  Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17 
• Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma

  Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker
  Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019 
• Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders

  Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan
  Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023 
• Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma

  Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker
  Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149 
• Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective

  Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker
  Cancers (2023), doi: 10.3390/cancers15112995 
• MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma

  Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker
  Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1 
• A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma

  Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker
  Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939 
• Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma

  Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker
  Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001 
• Clinical and imaging clues to the diagnosis and follow‐up of ptosis and ophthalmoparesis

  Keene, Kan, Meeren, Verbist, Tannemaat, Beenakker and Verschuuren
  Journal of Cachexia, Sarcopenia and Muscle (2022), doi: 10.1002/jcsm.13089 
• Effect of anatomical differences and intraocular lens design on negative dysphotopsia

  Vught, Que, Luyten and Beenakker
  Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054 
• Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses

  Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker
  Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w 
• Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.

  Beenakker and Rasch
  Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018 
• Magnetic resonance imaging reveals possible cause of diplopia after Baerveldt glaucoma implantation

  Islamaj, Vught, Jordaan-Kuip, Vermeer, Ferreira, Waard, Lemij and Beenakker
  PLoS ONE (2022), doi: 10.1371/journal.pone.0276527 
• MR imaging characteristics of uveal melanoma with histopathological validation

  Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker
  Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5 
• Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting

  Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager, Damato and Oncology, European Ocular Oncology Group and the International Society of Ocular
  Ophthalmic Research (2022), doi: 10.1159/000524372 
• An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma

  Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel
  Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697 
• Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging

  Vught, Dekker, Stoel, Luyten and Beenakker
  Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576 
• MRI-based 3D retinal shape determination

  Vught, Shamonin, Luyten, Stoel and Beenakker
  BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855 
• Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?

  Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs
  Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021 
• The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy

  Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker
  NMR in Biomedicine (2021), doi: 10.1002/nbm.4407 
• Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy

  Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman
  Medical Physics (2021), doi: 10.1002/mp.14665 
• Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia

  Vught, Luyten and Beenakker
  Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206 
• Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging

  Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker
  Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010 
• MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors

  Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker
  Cancers (2020), doi: 10.3390/cancers12030658 
• T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms

  Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling
  Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290 
• The Economic Value of MR-Imaging for Uveal Melanoma

  Fonk, Ferreira, Webb, Luyten and Beenakker
  Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405 
• Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions

  Koolstra, Beenakker, Koken, Webb and Börnert
  Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594 
• MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy

  Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker
  Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568 
• MRI of Uveal Melanoma

  Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker
  Cancers (2019), doi: 10.3390/cancers11030377 
• Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”

  Jaarsma-Coes, Ferreira, Luyten and Beenakker
  BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y 
• Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging

  Beenakker, Wezel, Groen, Webb and Börnert
  PLoS ONE (2019), doi: 10.1371/journal.pone.0222573 
• 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology

  Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd
  Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913 
• CT and MR imaging of orbital inflammation

  Ferreira, Saraiva, Genders, Buchem, Luyten and Beenakker
  Neuroradiology (2018), doi: 10.1007/s00234-018-2103-4 
• Automated eye blink detection and correction method for clinical MR eye imaging

  Wezel, Garpebring, Webb, Osch and Beenakker
  Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355 
• Equilibrium shape of the aqueous humor-vitreous substitute interface in vitrectomized eyes

  Isakova, Pralits, Romano, Beenakker, Shamonin and Repetto
  Modeling and Artificial Intelligence in Ophthalmology (2017), doi: 10.35119/maio.v1i3.36 
• Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning

  Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten
  Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4 
• Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging

  Beenakker, Shamonin, Webb, Luyten and Stoel
  Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161 
• A multi-purpose open-source triggering platform for magnetic resonance

  Ruytenberg, Webb and Beenakker
  Journal of Magnetic Resonance (2014), doi: 10.1016/j.jmr.2014.08.009 
• Design and performance of a transformer‐coupled double resonant quadrature birdcage coil for localized proton and phosphorus spectroscopy in the human calf muscle at 7 T

  Brand, Webb and Beenakker
  Concepts in Magnetic Resonance Part A (2013), doi: 10.1002/cmr.a.21281
• High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T

  Beenakker, Rijn, Luyten and Webb
  NMR in Biomedicine (2013), doi: 10.1002/nbm.3041 

Ocular Oncology

• PTCOG Ocular Survey - Perspective on Ocular Particle Therapy: Current Practices and Emerging Trends.

  Mortimer, Slopsema, Mazal, Beenakker, Dendale, Denker, Fleury, Groulier, Kacperek, Mishra, Saini, Trofimov, Thariat, Trnková, Vidal, Shih, Hrbacek and Heufelder
  International journal of particle therapy (2026), doi: 10.1016/j.ijpt.2026.101300 
• Accuracy of day-to-day patient positioning in ocular proton therapy with a dedicated beamline

  Hol, Spruijt, Rodrigues, Klaver, Kouwenberg, Bakker, Luyten, Kiliç, Beenakker, Astreinidou and Rasch
  PLOS One (2025), doi: 10.1371/journal.pone.0333294 
• Clinical outcomes and risk factors for local failure and visual impairment in patients treated with Ru-106 brachytherapy for uveal melanoma

  Pors, Marinkovic, Deuzeman, Vu, Kerkhof, Wieringen-Warmenhoven, Rasch, Bleeker, Koetsier, Beenakker, Luyten, Creutzberg and Horeweg
  Clinical and Translational Radiation Oncology (2025), doi: 10.1016/j.ctro.2025.100939 
• Estimating uveal melanoma volume with ellipsoid tumour models

  Klaassen, Ferreira, Luyten and Beenakker
  Acta Ophthalmologica (2025), doi: 10.1111/aos.17492 
• Evaluation of MRI Safety of Ru-106 Eye Applicators

  Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker
  Ocular Oncology and Pathology (2025), doi: 10.1159/000542712 
• Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging

  Haasjes, Vu and Beenakker
  Medical Physics (2025), doi: 10.1002/mp.17576 
• Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation

  Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker
  Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43 
• Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning

  Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker
  Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598 
• PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy

  Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra
  International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017 
• Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma

  Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker
  Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17 
• Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma

  Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker
  Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019 
• Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma

  Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker
  Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149 
• Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective

  Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker
  Cancers (2023), doi: 10.3390/cancers15112995 
• MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma

  Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker
  Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1 
• Time Trends in the Treatment and Survival of 5036 Uveal Melanoma Patients in The Netherlands over a 30-Year Period

  Tong, Bastiaannet, Speetjens, Blank, Luyten, Jager, Marinkovic, Vu, Rasch, Creutzberg, Beenakker, Hartgrink, Bosch, Kiliç, Naus, Yavuzyigitoglu, Rij, Burgmans and Kapiteijn
  Cancers (2023), doi: 10.3390/cancers15225419 
• A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma

  Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker
  Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939 
• Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma

  Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker
  Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001 
• Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses

  Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker
  Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w 
• Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.

  Beenakker and Rasch
  Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018 
• MR imaging characteristics of uveal melanoma with histopathological validation

  Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker
  Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5 
• Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting

  Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager, Damato and Oncology, European Ocular Oncology Group and the International Society of Ocular
  Ophthalmic Research (2022), doi: 10.1159/000524372 
• An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma

  Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel
  Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697 
• Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?

  Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs
  Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021 
• Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy

  Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman
  Medical Physics (2021), doi: 10.1002/mp.14665 
• Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging

  Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker
  Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010 
• MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors

  Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker
  Cancers (2020), doi: 10.3390/cancers12030658 
• The Economic Value of MR-Imaging for Uveal Melanoma

  Fonk, Ferreira, Webb, Luyten and Beenakker
  Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405 
• Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions

  Koolstra, Beenakker, Koken, Webb and Börnert
  Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594 
• MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy

  Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker
  Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568 
• MRI of Uveal Melanoma

  Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker
  Cancers (2019), doi: 10.3390/cancers11030377 
• Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”

  Jaarsma-Coes, Ferreira, Luyten and Beenakker
  BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y 
• Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging

  Beenakker, Wezel, Groen, Webb and Börnert
  PLoS ONE (2019), doi: 10.1371/journal.pone.0222573 
• 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology

  Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd
  Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913 
• Automated eye blink detection and correction method for clinical MR eye imaging

  Wezel, Garpebring, Webb, Osch and Beenakker
  Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355 
• Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning

  Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten
  Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4 
• High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T

  Beenakker, Rijn, Luyten and Webb
  NMR in Biomedicine (2013), doi: 10.1002/nbm.3041 

Visual Optics

• A Novel MRI-Based Approach to Peripheral Refraction and Prediction of Myopia Progression

  Kneepkens, Vught, Polling, Klaver, Tideman and Beenakker
  American Journal of Ophthalmology (2025), doi: 10.1016/j.ajo.2025.06.013 
• Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging

  Haasjes, Vu and Beenakker
  Medical Physics (2025), doi: 10.1002/mp.17576 
• Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation

  Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker
  Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43 
• Measuring quality of vision including negative dysphotopsia

  Makhotkina, Nijkamp, Berendschot, Borne, Kruchten, Vught, Beenakker, Krijgh, Aslam, Pesudovs and Nuijts
  Acta Ophthalmologica (2024), doi: 10.1111/aos.15762 
• ZOSPy: optical ray tracing in Python through OpticStudio

  Vught, Haasjes and Beenakker
  Journal of Open Source Software (2024), doi: 10.21105/joss.05756 
• More on light dysphotopsia origin in pseudophakia

  Grzybowski and Beenakker
  Graefe's Archive for Clinical and Experimental Ophthalmology (2023), doi: 10.1007/s00417-023-06029-w 
• Peripheral visual field shifts after intraocular lens implantation

  Vught, Luyten and Beenakker
  Journal of Cataract & Refractive Surgery (2023), doi: 10.1097/j.jcrs.0000000000001299 
• Effect of anatomical differences and intraocular lens design on negative dysphotopsia

  Vught, Que, Luyten and Beenakker
  Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054 
• The Value of Static Perimetry in the Diagnosis and Follow-up of Negative Dysphotopsia

  Rozendal, Vught, Luyten and Beenakker
  Optometry and Vision Science (2022), doi: 10.1097/opx.0000000000001918 
• Two-year results after combined phacoemulsification and iris-fixated phakic intraocular lens removal

  Gaurisankar, Rijn, Cheng, Luyten and Beenakker
  Graefe's Archive for Clinical and Experimental Ophthalmology (2022), doi: 10.1007/s00417-021-05442-3 
• Differences between Scheimpflug and optical coherence tomography in determining safety distances in eyes with an iris-fixating phakic intraocular lens

  Gaurisankar, Rijn, Luyten and Beenakker
  Graefe's Archive for Clinical and Experimental Ophthalmology (2021), doi: 10.1007/s00417-020-04874-7 
• Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging

  Vught, Dekker, Stoel, Luyten and Beenakker
  Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576 
• Implantation of an iris-fixated phakic intraocular lens for the correction of hyperopia: 15-year follow-up

  Rijn, Gaurisankar, Saxena, Gibbes, Jongman, Haasnoot, Cheng, Beenakker and Luyten
  Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000532 
• Long‐term longitudinal changes in axial length in the Caucasian myopic and hyperopic population with a phakic intraocular lens

  Gaurisankar, Rijn, Haasnoot, Verhoeven, Klaver, Luyten and Beenakker
  Acta Ophthalmologica (2021), doi: 10.1111/aos.14647 
• MRI-based 3D retinal shape determination

  Vught, Shamonin, Luyten, Stoel and Beenakker
  BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855 
• Reply to comment on: Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotop

  Vught, Beenakker and Luyten
  Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000431 
• Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia

  Vught, Luyten and Beenakker
  Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206 
• Improved Interchangeability with Different Corneal Specular Microscopes for Quantitative Endothelial Cell Analysis

  Rijn, Wijnen, Dooren, Cheng, Beenakker and Luyten
  Clinical Ophthalmology (2020), doi: 10.2147/opth.s228347 
• Middle- and long-term results after iris-fixated phakic intraocular lens implantation in myopic and hyperopic patients: a meta-analysis

  Rijn, Gaurisankar, Ilgenfritz, Lima, Haasnoot, Beenakker, Cheng and Luyten
  Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000002 
• Correlations between ocular biometrics and refractive error: A systematic review and meta‐analysis

  Gaurisankar, Rijn, Lima, Ilgenfritz, Cheng, Haasnoot, Luyten and Beenakker
  Acta Ophthalmologica (2019), doi: 10.1111/aos.14208 
• Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging

  Beenakker, Shamonin, Webb, Luyten and Stoel
  Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161 

Ocular Radiotherapy

• PTCOG Ocular Survey - Perspective on Ocular Particle Therapy: Current Practices and Emerging Trends.

  Mortimer, Slopsema, Mazal, Beenakker, Dendale, Denker, Fleury, Groulier, Kacperek, Mishra, Saini, Trofimov, Thariat, Trnková, Vidal, Shih, Hrbacek and Heufelder
  International journal of particle therapy (2026), doi: 10.1016/j.ijpt.2026.101300 
• Accuracy of day-to-day patient positioning in ocular proton therapy with a dedicated beamline

  Hol, Spruijt, Rodrigues, Klaver, Kouwenberg, Bakker, Luyten, Kiliç, Beenakker, Astreinidou and Rasch
  PLOS One (2025), doi: 10.1371/journal.pone.0333294 
• Clinical outcomes and risk factors for local failure and visual impairment in patients treated with Ru-106 brachytherapy for uveal melanoma

  Pors, Marinkovic, Deuzeman, Vu, Kerkhof, Wieringen-Warmenhoven, Rasch, Bleeker, Koetsier, Beenakker, Luyten, Creutzberg and Horeweg
  Clinical and Translational Radiation Oncology (2025), doi: 10.1016/j.ctro.2025.100939 
• Evaluation of MRI Safety of Ru-106 Eye Applicators

  Tang, Klaassen, Marinkovic, Vu, Luyten, Creutzberg, Ketelaars and Beenakker
  Ocular Oncology and Pathology (2025), doi: 10.1159/000542712 
• Patient‐specific mapping of fundus photographs to three‐dimensional ocular imaging

  Haasjes, Vu and Beenakker
  Medical Physics (2025), doi: 10.1002/mp.17576 
• Correction Method for Optical Scaling of Fundoscopy Images: Development, Validation, and First Implementation

  Pors, Haasjes, Vught, Hoes, Luyten, Rijn, Vu, Rasch, Horeweg and Beenakker
  Investigative Opthalmology & Visual Science (2024), doi: 10.1167/iovs.65.1.43 
• Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning

  Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker
  Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598 
• PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy

  Hrbacek, Kacperek, Beenakker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra
  International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017 
• Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma

  Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker
  Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17 
• Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma

  Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker
  Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019 
• Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma

  Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker
  Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149 
• Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma

  Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker
  Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001 
• Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.

  Beenakker and Rasch
  Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018 
• An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma

  Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel
  Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697 
• Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy

  Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman
  Medical Physics (2021), doi: 10.1002/mp.14665 
• Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging

  Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker
  Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010 
• The Economic Value of MR-Imaging for Uveal Melanoma

  Fonk, Ferreira, Webb, Luyten and Beenakker
  Clinical Ophthalmology (2020), doi: 10.2147/opth.s238405 

Quantitative MRI

• Quantitative Perfusion-Weighted Magnetic Resonance Imaging in Uveal Melanoma

  Klaassen, Jaarsma-Coes, Marinkovic, Luyten, Rasch, Ferreira and Beenakker
  Investigative Ophthalmology & Visual Science (2024), doi: 10.1167/iovs.65.11.17 
• Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders

  Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan
  Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023 
• Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses

  Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker
  Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w 
• Selection Approach to Identify the Optimal Biomarker Using Quantitative Muscle MRI and Functional Assessments in Becker Muscular Dystrophy

  Velde, Hooijmans, Mishre, Keene, Koeks, Veeger, Alleman, Zwet, Beenakker, Verschuuren, Kan and Niks
  Neurology (2021), doi: 10.1212/wnl.0000000000012233 
• The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy

  Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker
  NMR in Biomedicine (2021), doi: 10.1002/nbm.4407 
• T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms

  Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling
  Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290