Publications by year

2024

  • Vught, Haasjes and Beenakker. ZOSPy: optical ray tracing in Python through OpticStudio. Journal of Open Source Software (2024), doi: 10.21105/joss.05756 
  • Hrbacek, Kacperek, Beenaker, Mortimer, Denker, Mazal, Shih, Dendale, Slopsema, Heufelder and Mishra. PTCOG Ocular Statement: Expert Summary of Current Practices and Future Developments in Ocular Proton Therapy. International Journal of Radiation Oncology*Biology*Physics (2024), doi: 10.1016/j.ijrobp.2024.06.017 
  • Makhotkina, Nijkamp, Berendschot, Borne, Kruchten, Vught, Beenakker, Krijgh, Aslam, Pesudovs and Nuijts. Measuring quality of vision including negative dysphotopsia. Acta Ophthalmologica (2024), doi: 10.1111/aos.15762 
  • Klaassen, Haasjes, Hol, Lopes, Spruijt, Steeg-Henzen, Vu, Bakker, Rasch, Verbist and Beenakker. Geometrical accuracy of magnetic resonance imaging for ocular proton therapy planning. Physics and Imaging in Radiation Oncology (2024), doi: 10.1016/j.phro.2024.100598 

2023

  • Tong, Bastiaannet, Speetjens, Blank, Luyten, Jager, Marinkovic, Vu, Rasch, Creutzberg, Beenakker, Hartgrink, Bosch, Kiliç, Naus, Yavuzyigitoglu, Rij, Burgmans and Kapiteijn. Time Trends in the Treatment and Survival of 5036 Uveal Melanoma Patients in The Netherlands over a 30-Year Period. Cancers (2023), doi: 10.3390/cancers15225419 
  • Vught, Luyten and Beenakker. Peripheral visual field shifts after intraocular lens implantation. Journal of Cataract & Refractive Surgery (2023), doi: 10.1097/j.jcrs.0000000000001299 
  • Tang, Ferreira, Marinkovic, Jaarsma-Coes, Klaassen, Vu, Creutzberg, Rodrigues, Horeweg, Klaver, Rasch, Luyten and Beenakker. MR-based follow-up after brachytherapy and proton beam therapy in uveal melanoma. Neuroradiology (2023), doi: 10.1007/s00234-023-03166-1 
  • Grzybowski and Beenakker. More on light dysphotopsia origin in pseudophakia. Graefe's Archive for Clinical and Experimental Ophthalmology (2023), doi: 10.1007/s00417-023-06029-w 
  • Jaarsma-Coes, Klaassen, Marinkovic, Luyten, Vu, Ferreira and Beenakker. Magnetic Resonance Imaging in the Clinical Care for Uveal Melanoma Patients—A Systematic Review from an Ophthalmic Perspective. Cancers (2023), doi: 10.3390/cancers15112995 
  • Jaarsma-Coes, Klaassen, Verbist, Vu, Klaver, Rodrigues, Nabarro, Luyten, Rasch, Herk and Beenakker. Inter-Observer Variability in MR-Based Target Volume Delineation of Uveal Melanoma. Advances in Radiation Oncology (2023), doi: 10.1016/j.adro.2022.101149 
  • Keene, Notting, Verschuuren, Voermans, Keizer, Beenakker, Tannemaat and Kan. Eye Muscle MRI in Myasthenia Gravis and Other Neuromuscular Disorders. Journal of Neuromuscular Diseases (2023), doi: 10.3233/jnd-230023 
  • Keene, Nie, Brink, Notting, Verschuuren, Kan, Beenakker and Tannemaat. Diagnosing myasthenia gravis using orthoptic measurements: assessing extraocular muscle fatiguability. Journal of Neurology, Neurosurgery & Psychiatry (2023), doi: 10.1136/jnnp-2022-329859 
  • Jaarsma-Coes, Ferreira, Marinkovic, Vu, Vught, Haren, Rodrigues, Klaver, Verbist, Luyten, Rasch and Beenakker. Comparison of Magnetic Resonance Imaging–Based and Conventional Measurements for Proton Beam Therapy of Uveal Melanoma. Ophthalmology Retina (2023), doi: 10.1016/j.oret.2022.06.019 

2022

  • Gaurisankar, Rijn, Cheng, Luyten and Beenakker. Two-year results after combined phacoemulsification and iris-fixated phakic intraocular lens removal. Graefe's Archive for Clinical and Experimental Ophthalmology (2022), doi: 10.1007/s00417-021-05442-3 
  • Rozendal, Vught, Luyten and Beenakker. The Value of Static Perimetry in the Diagnosis and Follow-up of Negative Dysphotopsia. Optometry and Vision Science (2022), doi: 10.1097/opx.0000000000001918 
  • Beenakker, Brouwer, Chau, Coupland, Fiorentzis, Heimann, Heufelder, Joussen, Kiilgaard, Kivelä, Piperno-Neumann, Rantala, Romanowska-Dixon, Shields, Willerding, Wheeler-Schilling, Scholl, Jager and Damato. Outcome Measures of New Technologies in Uveal Melanoma: Review from the European Vision Institute Special Interest Focus Group Meeting. Ophthalmic Research (2022), doi: 10.1159/000524372 
  • Ferreira, Jaarsma-Coes, Marinkovic, Verbist, Verdijk, Jager, Luyten and Beenakker. MR imaging characteristics of uveal melanoma with histopathological validation. Neuroradiology (2022), doi: 10.1007/s00234-021-02825-5 
  • Islamaj, Vught, Jordaan-Kuip, Vermeer, Ferreira, Waard, Lemij and Beenakker. Magnetic resonance imaging reveals possible cause of diplopia after Baerveldt glaucoma implantation. PLoS ONE (2022), doi: 10.1371/journal.pone.0276527 
  • Beenakker and Rasch. Letter to the Editor of Radiotherapy and Oncology regarding the paper titled “MRI and FUNDUS image fusion for improved ocular biometry in Ocular Proton Therapy” by Via et al.. Radiotherapy and Oncology (2022), doi: 10.1016/j.radonc.2022.08.018 
  • Jaarsma-Coes, Ferreira, Houdt, Heide, Luyten and Beenakker. Eye-specific quantitative dynamic contrast-enhanced MRI analysis for patients with intraocular masses. Magnetic Resonance Materials in Physics, Biology and Medicine (2022), doi: 10.1007/s10334-021-00961-w 
  • Vught, Que, Luyten and Beenakker. Effect of anatomical differences and intraocular lens design on negative dysphotopsia. Journal of Cataract & Refractive Surgery (2022), doi: 10.1097/j.jcrs.0000000000001054 
  • Keene, Kan, Meeren, Verbist, Tannemaat, Beenakker and Verschuuren. Clinical and imaging clues to the diagnosis and follow‐up of ptosis and ophthalmoparesis. Journal of Cachexia, Sarcopenia and Muscle (2022), doi: 10.1002/jcsm.13089 
  • Klaassen, Jaarsma-Coes, Verbist, Vu, Marinkovic, Rasch, Luyten and Beenakker. Automatic Three-Dimensional Magnetic Resonance-based measurements of tumour prominence and basal diameter for treatment planning of uveal melanoma. Physics and Imaging in Radiation Oncology (2022), doi: 10.1016/j.phro.2022.11.001 
  • Tang, Jaarsma‐Coes, Ferreira, Fonk, Marinkovic, Luyten and Beenakker. A Comparison of 3 T and 7 T MRI for the Clinical Evaluation of Uveal Melanoma. Journal of Magnetic Resonance Imaging (2022), doi: 10.1002/jmri.27939 

2021

  • Fleury, Trnková, Erdal, Hassan, Stoel, Jaarma‐Coes, Luyten, Herault, Webb, Beenakker, Pignol and Hoogeman. Three‐dimensional MRI‐based treatment planning approach for non‐invasive ocular proton therapy. Medical Physics (2021), doi: 10.1002/mp.14665 
  • Keene, Vught, Velde, Ciggaar, Notting, Genders, Verschuuren, Tannemaat, Kan and Beenakker. The feasibility of quantitative MRI of extra‐ocular muscles in myasthenia gravis and Graves' orbitopathy. NMR in Biomedicine (2021), doi: 10.1002/nbm.4407 
  • Velde, Hooijmans, Mishre, Keene, Koeks, Veeger, Alleman, Zwet, Beenakker, Verschuuren, Kan and Niks. Selection Approach to Identify the Optimal Biomarker Using Quantitative Muscle MRI and Functional Assessments in Becker Muscular Dystrophy. Neurology (2021), doi: 10.1212/wnl.0000000000012233 
  • Vught, Beenakker and Luyten. Reply to comment on: Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotop. Journal of Cataract and Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000431 
  • Niendorf, Beenakker, Langner, Erb-Eigner, Cuadra, Beller, Millward, Niendorf and Stachs. Ophthalmic Magnetic Resonance Imaging: Where Are We (Heading To)?. Current Eye Research (2021), doi: 10.1080/02713683.2021.1874021 
  • Vught, Shamonin, Luyten, Stoel and Beenakker. MRI-based 3D retinal shape determination. BMJ Open Ophthalmology (2021), doi: 10.1136/bmjophth-2021-000855 
  • Gaurisankar, Rijn, Haasnoot, Verhoeven, Klaver, Luyten and Beenakker. Long‐term longitudinal changes in axial length in the Caucasian myopic and hyperopic population with a phakic intraocular lens. Acta Ophthalmologica (2021), doi: 10.1111/aos.14647 
  • Rijn, Gaurisankar, Saxena, Gibbes, Jongman, Haasnoot, Cheng, Beenakker and Luyten. Implantation of an iris-fixated phakic intraocular lens for the correction of hyperopia: 15-year follow-up. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000532 
  • Vught, Dekker, Stoel, Luyten and Beenakker. Evaluation of intraocular lens position and retinal shape in negative dysphotopsia using high-resolution magnetic resonance imaging. Journal of Cataract & Refractive Surgery (2021), doi: 10.1097/j.jcrs.0000000000000576 
  • Gaurisankar, Rijn, Luyten and Beenakker. Differences between Scheimpflug and optical coherence tomography in determining safety distances in eyes with an iris-fixating phakic intraocular lens. Graefe's Archive for Clinical and Experimental Ophthalmology (2021), doi: 10.1007/s00417-020-04874-7 
  • Hassan, Fleury, Shamonin, Fonk, Marinkovic, Jaarsma-Coes, Luyten, Webb, Beenakker and Stoel. An Automatic Framework to Create Patient-specific Eye Models From 3D Magnetic Resonance Images for Treatment Selection in Patients With Uveal Melanoma. Advances in Radiation Oncology (2021), doi: 10.1016/j.adro.2021.100697 

2020

  • Fonk, Ferreira, Webb, Luyten and Beenakker. The Economic Value of MR-Imaging for Uveal Melanoma. Clinical Ophthalmology (Auckland, N.Z.) (2020), doi: 10.2147/opth.s238405 
  • Keene, Beenakker, Hooijmans, Naarding, Niks, Otto, Pol, Tannemaat, Kan and Froeling. T2 relaxation‐time mapping in healthy and diseased skeletal muscle using extended phase graph algorithms. Magnetic Resonance in Medicine (2020), doi: 10.1002/mrm.28290 
  • Ferreira, Pinheiro, Saraiva, Jaarsma-Coes, Duinen, Genders, Marinkovic and Beenakker. MR and CT Imaging of the Normal Eyelid and its Application in Eyelid Tumors. Cancers (2020), doi: 10.3390/cancers12030658 
  • Rijn, Gaurisankar, Ilgenfritz, Lima, Haasnoot, Beenakker, Cheng and Luyten. Middle- and long-term results after iris-fixated phakic intraocular lens implantation in myopic and hyperopic patients: a meta-analysis. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000002 
  • Jaarsma-Coes, Marinkovic, Astreinidou, Schuurmans, Peters, Luyten, Rasch and Beenakker. Measuring eye deformation between planning and proton beam therapy position using magnetic resonance imaging. Physics and Imaging in Radiation Oncology (2020), doi: 10.1016/j.phro.2020.09.010 
  • Rijn, Wijnen, Dooren, Cheng, Beenakker and Luyten. Improved Interchangeability with Different Corneal Specular Microscopes for Quantitative Endothelial Cell Analysis. Clinical Ophthalmology (Auckland, N.Z.) (2020), doi: 10.2147/opth.s228347 
  • Vught, Luyten and Beenakker. Distinct differences in anterior chamber configuration and peripheral aberrations in negative dysphotopsia. Journal of Cataract and Refractive Surgery (2020), doi: 10.1097/j.jcrs.0000000000000206 

2019

  • Beenakker, Wezel, Groen, Webb and Börnert. Silent volumetric multi-contrast 7 Tesla MRI of ocular tumors using Zero Echo Time imaging. PLoS ONE (2019), doi: 10.1371/journal.pone.0222573 
  • Jaarsma-Coes, Ferreira, Luyten and Beenakker. Reaction on “Ocular ultrasound versus MRI in the detection of extrascleral extension in a patient with choroidal melanoma”. BMC Ophthalmology (2019), doi: 10.1186/s12886-019-1206-y 
  • Ferreira, Fonk, Jaarsma-Coes, Haren, Marinkovic and Beenakker. MRI of Uveal Melanoma. Cancers (2019), doi: 10.3390/cancers11030377 
  • Jaarsma-Coes, Ferreira, Haren, Marinkovic and Beenakker. MRI enables accurate diagnosis and follow-up in uveal melanoma patients after vitrectomy. Melanoma Research (2019), doi: 10.1097/cmr.0000000000000568 
  • Gaurisankar, Rijn, Lima, Ilgenfritz, Cheng, Haasnoot, Luyten and Beenakker. Correlations between ocular biometrics and refractive error: A systematic review and meta‐analysis. Acta Ophthalmologica (2019), doi: 10.1111/aos.14208 
  • Koolstra, Beenakker, Koken, Webb and Börnert. Cartesian MR fingerprinting in the eye at 7T using compressed sensing and matrix completion‐based reconstructions. Magnetic Resonance in Medicine (2019), doi: 10.1002/mrm.27594 

2018

  • Ferreira, Saraiva, Genders, Buchem, Luyten and Beenakker. CT and MR imaging of orbital inflammation. Neuroradiology (2018), doi: 10.1007/s00234-018-2103-4 
  • Jong, Graaf, Pouwels, Beenakker, Jansen, Geurts, Moll, Castelijns, Valk and Weerd. 9.4T and 17.6T MRI of Retinoblastoma: Ex Vivo evaluation of microstructural anatomy and disease extent compared with histopathology. Journal of Magnetic Resonance Imaging (2018), doi: 10.1002/jmri.25913 

2017

  • Diemen, Berends, Akram, Wezel, Teeuwisse, Mik, Kan, Webb, Beenakker and Groeneveld. Validation of a pharmacological model for mitochondrial dysfunction in healthy subjects using simvastatin: A randomized placebo-controlled proof-of-pharmacology study. European Journal of Pharmacology (2017), doi: 10.1016/j.ejphar.2017.09.031 
  • Isakova, Pralits, Romano, Beenakker, Shamonin and Repetto. Equilibrium shape of the aqueous humor-vitreous substitute interface in vitrectomized eyes. Journal for Modeling in Ophthalmology (2017), doi: 10.35119/maio.v1i3.36
  • Wezel, Garpebring, Webb, Osch and Beenakker. Automated eye blink detection and correction method for clinical MR eye imaging. Magnetic Resonance in Medicine (2017), doi: 10.1002/mrm.26355 

2016

  • Beenakker, Ferreira, Soemarwoto, Genders, Teeuwisse, Webb and Luyten. Clinical evaluation of ultra-high-field MRI for three-dimensional visualisation of tumour size in uveal melanoma patients, with direct relevance to treatment planning. Magnetic Resonance Materials in Physics, Biology and Medicine (2016), doi: 10.1007/s10334-016-0529-4 

2015

  • Beenakker, Shamonin, Webb, Luyten and Stoel. Automated Retinal Topographic Maps Measured With Magnetic Resonance Imaging. Investigative Ophthalmology & Visual Science (2015), doi: 10.1167/iovs.14-15161 

2014

  • Ruytenberg, Webb and Beenakker. A multi-purpose open-source triggering platform for magnetic resonance. Journal of Magnetic Resonance (2014), doi: 10.1016/j.jmr.2014.08.009 

2013

  • Beenakker, Rijn, Luyten and Webb. High‐resolution MRI of uveal melanoma using a microcoil phased array at 7 T. NMR in Biomedicine (2013), doi: 10.1002/nbm.3041 
  • Brand, Webb and Beenakker. Design and performance of a transformer‐coupled double resonant quadrature birdcage coil for localized proton and phosphorus spectroscopy in the human calf muscle at 7 T. Concepts in Magnetic Resonance Part A (2013), doi: 10.1002/cmr.a.21281

2012

  • He, Lamers, Beenakker, Cui, Ghotra, Danen, Meijer, Spaink and Snaar‐Jagalska. Neutrophil‐mediated experimental metastasis is enhanced by VEGFR inhibition in a zebrafish xenograft model. The Journal of Pathology (2012), doi: 10.1002/path.4013 
  • Beenakker, Ashcroft, Lindeman and Oosterkamp. Mechanical Properties of the Extracellular Matrix of the Aorta Studied by Enzymatic Treatments. Biophysical Journal (2012), doi: 10.1016/j.bpj.2012.03.041 

2010

  • Lindeman, Ashcroft, Beenakker, Es, Koekkoek, Prins, Tielemans, Abdul-Hussien, Bank and Oosterkamp. Distinct defects in collagen microarchitecture underlie vessel-wall failure in advanced abdominal aneurysms and aneurysms in Marfan syndrome. Proceedings of the National Academy of Sciences (2010), doi: 10.1073/pnas.0910312107